Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DW921_02840 | Not Available | Negative | 604955 - 605701 | 27330.9 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_02845 | Not Available | Negative | 605711 - 606931 | 44220.0 |
| tolc family protein | DW921_02850 | Not Available | Negative | 606966 - 608309 | 50386.3 |
| duf4492 domain-containing protein | DW921_02855 | Not Available | Positive | 608454 - 608684 | 9121.46 |
| cytochrome ubiquinol oxidase subunit i | DW921_02860 | Not Available | Positive | 608712 - 610211 | 55282.9 |
| cytochrome d ubiquinol oxidase subunit ii | DW921_02865 | Not Available | Positive | 610240 - 611391 | 43352.2 |
| hemerythrin domain-containing protein | DW921_02870 | Not Available | Positive | 611505 - 612200 | 26799.0 |
| dna-binding response regulator | DW921_02875 | Not Available | Positive | 612197 - 612805 | 22884.7 |
| (fe-s)-binding protein | DW921_02880 | Not Available | Positive | 613287 - 614027 | 27343.9 |
| lactate utilization protein | DW921_02885 | Not Available | Positive | 614024 - 615391 | 51258.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


