Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine phosphoribosyltransferase | DW921_02540 | Not Available | Positive | 535576 - 536100 | 19283.5 |
| excinuclease abc subunit uvrc | DW921_02545 | Not Available | Positive | 536187 - 538007 | 69814.5 |
| d-tyrosyl-trna(tyr) deacylase | DW921_02550 | Not Available | Positive | 538086 - 538538 | 16546.1 |
| pyrophosphatase | DW921_02555 | Not Available | Positive | 538540 - 538860 | 12110.4 |
| deoxyribose-phosphate aldolase | DW921_02560 | Not Available | Positive | 538866 - 539828 | 35699.1 |
| polyprenyl synthetase family protein | DW921_02565 | Not Available | Negative | 539896 - 540870 | 36142.4 |
| dna polymerase i | DW921_02570 | Not Available | Positive | 540963 - 543734 | 105273.0 |
| duf3836 domain-containing protein | DW921_02575 | Not Available | Positive | 543887 - 544273 | 15054.1 |
| redox-regulated atpase ychf | DW921_02580 | Not Available | Positive | 544554 - 545657 | 40848.8 |
| ketopantoate reductase family protein | DW921_02585 | Not Available | Positive | 545678 - 546586 | 33024.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


