Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | DW921_02490 | Not Available | Negative | 521942 - 523924 | 73599.6 |
| succinate dehydrogenase/fumarate reductase cytochrome b subunit | DW921_02495 | Not Available | Negative | 523958 - 524647 | 25969.5 |
| s41 family peptidase | DW921_02500 | Not Available | Negative | 524767 - 526353 | 59759.5 |
| pantetheine-phosphate adenylyltransferase | DW921_02505 | Not Available | Negative | 526364 - 526819 | 17171.8 |
| type iia dna topoisomerase subunit b | DW921_02510 | Not Available | Negative | 526876 - 528816 | 73253.0 |
| n-acetyltransferase | DW921_02515 | Not Available | Negative | 528838 - 529968 | 43724.1 |
| duf3810 domain-containing protein | DW921_02520 | Not Available | Negative | 530387 - 531592 | 46812.5 |
| hypothetical protein | DW921_02525 | Not Available | Positive | 531591 - 532823 | 44240.1 |
| rrna maturation rnase ybey | DW921_02530 | Not Available | Positive | 532885 - 533307 | 16006.0 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DW921_02535 | Not Available | Positive | 533647 - 535518 | 69874.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


