Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DW921_01635 | Not Available | Negative | 348360 - 351374 | 114543.0 |
| nudix domain-containing protein | DW921_01640 | Not Available | Negative | 351422 - 351955 | 20271.1 |
| asnc family transcriptional regulator | DW921_01645 | Not Available | Positive | 352145 - 352612 | 17403.2 |
| duf4491 family protein | DW921_01650 | Not Available | Positive | 352612 - 352950 | 13008.0 |
| linear amide c-n hydrolase | DW921_01655 | Not Available | Negative | 353045 - 354124 | 39666.3 |
| iron-containing alcohol dehydrogenase | DW921_01660 | Not Available | Positive | 354391 - 355563 | 42747.7 |
| hypothetical protein | DW921_01665 | Not Available | Positive | 355930 - 356733 | 30525.1 |
| hypothetical protein | DW921_01670 | Not Available | Positive | 356814 - 357614 | 30230.7 |
| hypothetical protein | DW921_01675 | Not Available | Positive | 357616 - 359415 | 67621.2 |
| acyl-coa thioesterase | DW921_01680 | Not Available | Negative | 359507 - 359950 | 16802.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


