Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna methyltransferase erm | DW921_14945 | Not Available | Negative | 3470447 - 3471172 | 27418.7 |
| duf340 domain-containing protein | DW921_14950 | Not Available | Positive | 3471619 - 3471903 | 10395.3 |
| lysine exporter lyso family protein | DW921_14955 | Not Available | Positive | 3471893 - 3472513 | 22230.0 |
| hypothetical protein | DW921_14960 | Not Available | Positive | 3472692 - 3473942 | 47308.0 |
| alkaline phosphatase | DW921_14965 | Not Available | Positive | 3474340 - 3475323 | 35598.8 |
| cof-type had-iib family hydrolase | DW921_14970 | Not Available | Positive | 3475320 - 3476105 | 28818.9 |
| amidophosphoribosyltransferase | DW921_14975 | Not Available | Positive | 3476329 - 3477735 | 52223.0 |
| is4/is5 family transposase | DW921_14980 | Not Available | Negative | 3477902 - 3478415 | 20481.0 |
| is4 family transposase | DW921_14985 | Not Available | Negative | 3478583 - 3479235 | 25604.9 |
| is30 family transposase is4351 | DW921_15015 | Not Available | Negative | 3485782 - 3486762 | 37996.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


