Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | DW921_14185 | Not Available | Positive | 3297468 - 3298442 | 34383.5 |
| hypothetical protein | DW921_14190 | Not Available | Negative | 3298571 - 3298771 | 7679.61 |
| cys-xaa-xaa-xaa repeat radical sam target protein | DW921_14200 | Not Available | Negative | 3299805 - 3300041 | 8360.0 |
| upxy family transcription antiterminator | DW921_14205 | Not Available | Negative | 3300081 - 3300761 | 25150.4 |
| hypothetical protein | DW921_14210 | Not Available | Negative | 3301477 - 3301917 | 15812.9 |
| conjugal transfer protein | DW921_14225 | Not Available | Positive | 3305970 - 3306623 | 25101.0 |
| hypothetical protein | DW921_14235 | Not Available | Positive | 3307424 - 3308077 | 24408.3 |
| duf5045 domain-containing protein | DW921_14240 | Not Available | Positive | 3308067 - 3308753 | 26980.2 |
| hypothetical protein | DW921_14245 | Not Available | Positive | 3308786 - 3309913 | 40715.2 |
| conjugative transposon protein trak | DW921_14250 | Not Available | Positive | 3309932 - 3310528 | 22927.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


