Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4847 domain-containing protein | DW921_14025 | Not Available | Positive | 3268136 - 3268600 | 17250.6 |
| cmp deaminase | DW921_14030 | Not Available | Positive | 3268625 - 3269065 | 16464.8 |
| s41 family peptidase | DW921_14035 | Not Available | Positive | 3269069 - 3270820 | 64855.5 |
| 5-formyltetrahydrofolate cyclo-ligase | DW921_14040 | Not Available | Positive | 3270720 - 3271277 | 21612.9 |
| duf721 domain-containing protein | DW921_14045 | Not Available | Negative | 3271264 - 3271554 | 11102.6 |
| dna replication and repair protein recf | DW921_14050 | Not Available | Negative | 3271541 - 3272665 | 43167.6 |
| hypothetical protein | DW921_14055 | Not Available | Positive | 3272814 - 3273491 | 24477.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | DW921_14060 | Not Available | Positive | 3273645 - 3274136 | 17294.8 |
| Trna-tyr | Not Available | Not Available | Positive | 3274200 - 3274285 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3274290 - 3274362 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


