Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | DW921_13760 | Not Available | Positive | 3209971 - 3210528 | 20471.7 |
| acetyl-coa synthetase | DW921_13765 | Not Available | Positive | 3210543 - 3212198 | 62670.8 |
| gfo/idh/moca family oxidoreductase | DW921_13770 | Not Available | Negative | 3212386 - 3213933 | 57519.7 |
| Trna-phe | Not Available | Not Available | Positive | 3214311 - 3214383 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 3214394 - 3214466 | Not Available |
| transposase family protein | DW921_13785 | Not Available | Positive | 3214649 - 3214990 | 13442.0 |
| hypothetical protein | DW921_13795 | Not Available | Negative | 3217243 - 3217434 | 6399.38 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DW921_13800 | Not Available | Positive | 3217791 - 3219107 | 49244.1 |
| glycosyltransferase family 2 protein | DW921_13805 | Not Available | Positive | 3219104 - 3220150 | 39707.3 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW921_13810 | Not Available | Negative | 3220105 - 3221049 | 36444.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


