Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DW921_13710 | Not Available | Positive | 3201655 - 3202032 | 14645.6 |
| mate family efflux transporter | DW921_13715 | Not Available | Positive | 3202097 - 3203443 | 49189.8 |
| pyrroline-5-carboxylate reductase | DW921_13720 | Not Available | Negative | 3203451 - 3204224 | 27467.6 |
| hypothetical protein | DW921_13725 | Not Available | Positive | 3204304 - 3204531 | 8863.66 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DW921_13730 | Not Available | Negative | 3204533 - 3205654 | 40534.1 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DW921_13735 | Not Available | Negative | 3205668 - 3206636 | 36020.4 |
| argininosuccinate synthase | DW921_13740 | Not Available | Negative | 3206633 - 3207841 | 45043.7 |
| n-acetyltransferase | DW921_13745 | Not Available | Negative | 3207881 - 3208450 | 21196.6 |
| arginine repressor | DW921_13750 | Not Available | Negative | 3208478 - 3208957 | 17759.4 |
| class i sam-dependent methyltransferase | DW921_13755 | Not Available | Positive | 3209121 - 3209861 | 28071.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


