Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase subunit alpha | DW921_13660 | Not Available | Negative | 3189538 - 3191160 | 58585.0 |
| amidohydrolase | DW921_13665 | Not Available | Negative | 3191195 - 3191956 | 28720.3 |
| alpha-1,3-galactosidase b | DW921_13670 | Not Available | Negative | 3192127 - 3193905 | 67157.1 |
| naat family transporter | DW921_13675 | Not Available | Positive | 3194269 - 3194919 | 23972.4 |
| glycosidase | DW921_13680 | Not Available | Negative | 3195048 - 3196019 | 36856.8 |
| mfs transporter | DW921_13685 | Not Available | Negative | 3196063 - 3197427 | 50789.1 |
| peroxiredoxin | DW921_13690 | Not Available | Positive | 3197604 - 3198170 | 21042.2 |
| alkyl hydroperoxide reductase subunit f | DW921_13695 | Not Available | Positive | 3198187 - 3199737 | 55345.4 |
| abc transporter atp-binding protein | DW921_13700 | Not Available | Positive | 3199950 - 3200786 | 31179.7 |
| hypothetical protein | DW921_13705 | Not Available | Positive | 3200798 - 3201658 | 33326.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


