Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amp-binding protein | DW921_13610 | Not Available | Positive | 3175180 - 3176829 | 62374.5 |
| sel1 repeat family protein | DW921_13615 | Not Available | Negative | 3177259 - 3178362 | 41934.4 |
| citrate/2-methylcitrate synthase | DW921_13620 | Not Available | Negative | 3178425 - 3179765 | 50861.5 |
| nadp-dependent isocitrate dehydrogenase | DW921_13625 | Not Available | Negative | 3179778 - 3181037 | 45976.6 |
| aconitate hydratase | DW921_13630 | Not Available | Negative | 3181067 - 3183328 | 82056.2 |
| sodium-translocating pyrophosphatase | DW921_13635 | Not Available | Positive | 3183589 - 3185793 | 77112.8 |
| amino acid-binding protein | DW921_13640 | Not Available | Negative | 3185872 - 3186288 | 15595.0 |
| phenylacetate--coa ligase family protein | DW921_13645 | Not Available | Negative | 3186308 - 3187609 | 48964.1 |
| pyridoxal phosphate-dependent aminotransferase | DW921_13650 | Not Available | Negative | 3187638 - 3188948 | 48528.4 |
| indolepyruvate oxidoreductase subunit beta | DW921_13655 | Not Available | Negative | 3188945 - 3189541 | 21252.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


