Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| v-type atp synthase subunit a | DW921_13555 | Not Available | Negative | 3162624 - 3164381 | 66120.6 |
| duf2764 domain-containing protein | DW921_13560 | Not Available | Negative | 3164396 - 3165235 | 32435.6 |
| hypothetical protein | DW921_13565 | Not Available | Negative | 3165245 - 3165835 | 21883.1 |
| hypothetical protein | DW921_13570 | Not Available | Negative | 3166487 - 3167026 | 21152.3 |
| 6-bladed beta-propeller | DW921_13575 | Not Available | Negative | 3167013 - 3168215 | 44611.4 |
| hypothetical protein | DW921_13580 | Not Available | Negative | 3168219 - 3168560 | 12498.9 |
| vwa domain-containing protein | DW921_13590 | Not Available | Negative | 3170599 - 3171858 | 49123.7 |
| atpase | DW921_13595 | Not Available | Negative | 3171914 - 3173542 | 61950.2 |
| dmt family transporter | DW921_13600 | Not Available | Negative | 3173530 - 3174435 | 34254.4 |
| xre family transcriptional regulator | DW921_13605 | Not Available | Positive | 3174587 - 3175165 | 21419.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


