Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin family protein | DW921_13505 | Not Available | Positive | 3150394 - 3150870 | 17483.8 |
| hypothetical protein | DW921_13510 | Not Available | Negative | 3150949 - 3151386 | 16715.0 |
| sensor histidine kinase | DW921_13515 | Not Available | Negative | 3151533 - 3152822 | 49619.8 |
| dna-binding response regulator | DW921_13520 | Not Available | Negative | 3152819 - 3153496 | 26137.4 |
| alpha-glucan family phosphorylase | DW921_13525 | Not Available | Negative | 3153692 - 3156262 | 98455.1 |
| glycosyl transferase | DW921_13530 | Not Available | Negative | 3156303 - 3157967 | 63260.3 |
| v-type atp synthase subunit k | DW921_13535 | Not Available | Negative | 3158336 - 3158797 | 15483.3 |
| v-type atp synthase subunit i | DW921_13540 | Not Available | Negative | 3158836 - 3160659 | 66923.0 |
| v-type atp synthase subunit d | DW921_13545 | Not Available | Negative | 3160656 - 3161261 | 23533.9 |
| v-type atp synthase subunit b | DW921_13550 | Not Available | Negative | 3161283 - 3162602 | 48070.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


