Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_13455 | Not Available | Negative | 3137893 - 3139092 | 45259.9 |
| 3-deoxy-8-phosphooctulonate synthase | DW921_13460 | Not Available | Negative | 3139099 - 3139902 | 29314.7 |
| yegs/rv2252/bmru family lipid kinase | DW921_13465 | Not Available | Negative | 3139905 - 3140837 | 35143.5 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW921_13470 | Not Available | Negative | 3140841 - 3141761 | 35599.0 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DW921_13475 | Not Available | Negative | 3141911 - 3142921 | 35959.2 |
| molecular chaperone djla | DW921_13480 | Not Available | Negative | 3143170 - 3143967 | 29500.4 |
| glpgli family protein | DW921_13485 | Not Available | Positive | 3144156 - 3145865 | 63608.4 |
| glutamine-hydrolyzing gmp synthase | DW921_13490 | Not Available | Positive | 3146164 - 3147717 | 57487.2 |
| 6-bladed beta-propeller | DW921_13495 | Not Available | Positive | 3147947 - 3149044 | 42407.9 |
| 6-bladed beta-propeller | DW921_13500 | Not Available | Positive | 3149099 - 3150259 | 44244.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


