Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malonyl-[acyl-carrier protein] o-methyltransferase bioc | DW921_13345 | Not Available | Positive | 3113389 - 3114147 | 28645.4 |
| atp-dependent dethiobiotin synthetase biod | DW921_13350 | Not Available | Positive | 3114144 - 3114785 | 24474.5 |
| u32 family peptidase | DW921_13355 | Not Available | Negative | 3114930 - 3116195 | 47263.0 |
| hypothetical protein | DW921_13360 | Not Available | Negative | 3116342 - 3116650 | 10828.7 |
| trna dihydrouridine synthase dusb | DW921_13365 | Not Available | Positive | 3116951 - 3117934 | 36807.9 |
| l-glyceraldehyde 3-phosphate reductase | DW921_13370 | Not Available | Positive | 3117946 - 3118947 | 37188.2 |
| duf2807 domain-containing protein | DW921_13375 | Not Available | Negative | 3119028 - 3119942 | 32087.6 |
| pega domain-containing protein | DW921_13385 | Not Available | Positive | 3122122 - 3122538 | 16083.5 |
| serine protease | DW921_13390 | Not Available | Positive | 3122417 - 3124030 | 58613.1 |
| hypothetical protein | DW921_13395 | Not Available | Positive | 3124157 - 3124531 | 14356.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


