Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypoxanthine phosphoribosyltransferase | DW921_13245 | Not Available | Positive | 3094718 - 3095254 | 20184.7 |
| adenylate kinase | DW921_13250 | Not Available | Positive | 3095285 - 3095854 | 20768.0 |
| gtpase obge | DW921_13255 | Not Available | Positive | 3095966 - 3097144 | 44151.1 |
| peptidoglycan editing factor pgef | DW921_13260 | Not Available | Positive | 3097141 - 3097971 | 31156.1 |
| hypothetical protein | DW921_13265 | Not Available | Positive | 3097973 - 3098635 | 24444.1 |
| hypothetical protein | DW921_13270 | Not Available | Positive | 3098650 - 3098841 | 7044.71 |
| porin family protein | DW921_13275 | Not Available | Positive | 3099009 - 3099524 | 18945.7 |
| port family protein | DW921_13280 | Not Available | Positive | 3099677 - 3100291 | 22190.6 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | DW921_13285 | Not Available | Negative | 3100368 - 3101546 | 43976.4 |
| carbonic anhydrase | DW921_13290 | Not Available | Positive | 3101664 - 3102218 | 20779.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


