Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb family protein | DW921_13195 | Not Available | Positive | 3083354 - 3084208 | 30098.1 |
| dj-1/pfpi family protein | DW921_13200 | Not Available | Positive | 3084210 - 3084758 | 19207.6 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | DW921_13205 | Not Available | Positive | 3084758 - 3085420 | 24336.6 |
| atp-dependent dna helicase recg | DW921_13210 | Not Available | Positive | 3085468 - 3087567 | 80043.2 |
| type b 50s ribosomal protein l31 | DW921_13215 | Not Available | Negative | 3087666 - 3087917 | 9518.41 |
| class ii fructose-1,6-bisphosphate aldolase | DW921_13220 | Not Available | Positive | 3088488 - 3089495 | 36688.0 |
| duf3332 domain-containing protein | DW921_13225 | Not Available | Negative | 3089838 - 3090392 | 20262.1 |
| mfs transporter | DW921_13230 | Not Available | Positive | 3090568 - 3091929 | 49158.4 |
| duf4831 family protein | DW921_13235 | Not Available | Negative | 3092043 - 3093077 | 37945.6 |
| nad(p)h-hydrate dehydratase | DW921_13240 | Not Available | Negative | 3093085 - 3094602 | 55421.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


