Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_13145 | Not Available | Negative | 3075368 - 3075712 | 13283.9 |
| duf4313 domain-containing protein | DW921_13150 | Not Available | Negative | 3075899 - 3076552 | 25143.6 |
| hypothetical protein | DW921_13155 | Not Available | Negative | 3076573 - 3077451 | 34474.0 |
| hypothetical protein | DW921_13160 | Not Available | Negative | 3077455 - 3078624 | 45354.7 |
| site-specific integrase | DW921_13165 | Not Available | Negative | 3078850 - 3080070 | 47742.5 |
| Trna-lys | Not Available | Not Available | Positive | 3080314 - 3080386 | Not Available |
| nad kinase | DW921_13175 | Not Available | Negative | 3080497 - 3081381 | 32953.6 |
| pyridoxine 5'-phosphate synthase | DW921_13180 | Not Available | Positive | 3081490 - 3082203 | 26256.3 |
| mota/tolq/exbb proton channel family protein | DW921_13185 | Not Available | Positive | 3082206 - 3082925 | 26044.2 |
| biopolymer transporter exbd | DW921_13190 | Not Available | Positive | 3082932 - 3083348 | 15812.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


