Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_13040 | Not Available | Positive | 3060392 - 3060688 | 11653.3 |
| dna mismatch repair endonuclease mutl | DW921_13045 | Not Available | Positive | 3060700 - 3062616 | 70168.8 |
| peroxide stress protein yaaa | DW921_13050 | Not Available | Negative | 3062764 - 3063528 | 29480.6 |
| tlpa family protein disulfide reductase | DW921_13055 | Not Available | Positive | 3063651 - 3064169 | 19594.0 |
| sugar o-acetyltransferase | DW921_13060 | Not Available | Positive | 3064191 - 3064754 | 20583.7 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DW921_13065 | Not Available | Negative | 3064845 - 3068069 | 120101.0 |
| tryptophan--trna ligase | DW921_13070 | Not Available | Positive | 3068201 - 3069295 | 41570.9 |
| duf4891 domain-containing protein | DW921_13075 | Not Available | Positive | 3069317 - 3069727 | 15372.7 |
| Trna-val | Not Available | Not Available | Positive | 3070720 - 3070797 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 3070830 - 3070904 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


