Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps export abc transporter atp-binding protein | DW921_12990 | Not Available | Positive | 3046586 - 3047401 | 30873.2 |
| trigger factor | DW921_12995 | Not Available | Positive | 3047572 - 3048918 | 51251.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW921_13000 | Not Available | Positive | 3049081 - 3049755 | 24923.9 |
| atp-dependent clp protease atp-binding subunit clpx | DW921_13005 | Not Available | Positive | 3049790 - 3051040 | 46569.6 |
| dna helicase recq | DW921_13010 | Not Available | Positive | 3051179 - 3053362 | 82103.1 |
| imp dehydrogenase | DW921_13015 | Not Available | Positive | 3053517 - 3054992 | 52571.6 |
| peptidylprolyl isomerase | DW921_13020 | Not Available | Positive | 3055065 - 3056444 | 52949.7 |
| peptidyl-prolyl cis-trans isomerase | DW921_13025 | Not Available | Positive | 3056480 - 3057337 | 33133.7 |
| peptidylprolyl isomerase | DW921_13030 | Not Available | Positive | 3057343 - 3058716 | 52494.9 |
| hypothetical protein | DW921_13035 | Not Available | Positive | 3058722 - 3060389 | 64275.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


