Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is4 family transposase | DW921_12940 | Not Available | Negative | 3036704 - 3037513 | 31598.2 |
| n-acetylglucosamine-6-phosphate deacetylase | DW921_12945 | Not Available | Negative | 3037756 - 3038925 | 42102.5 |
| n-acetylglucosamine-6-phosphate deacetylase | DW921_12950 | Not Available | Negative | 3038946 - 3040112 | 42562.5 |
| duf177 domain-containing protein | DW921_12955 | Not Available | Positive | 3040428 - 3040952 | 19924.4 |
| 50s ribosomal protein l32 | DW921_12960 | Not Available | Positive | 3040969 - 3041154 | 6852.33 |
| ketoacyl-acp synthase iii | DW921_12965 | Not Available | Positive | 3041270 - 3042271 | 36744.1 |
| gtpase era | DW921_12970 | Not Available | Positive | 3042352 - 3043233 | 33735.1 |
| ribosome biogenesis gtpase der | DW921_12975 | Not Available | Positive | 3043274 - 3044587 | 49332.4 |
| abc transporter atp-binding protein | DW921_12980 | Not Available | Negative | 3044944 - 3045711 | 28927.0 |
| abc transporter permease | DW921_12985 | Not Available | Negative | 3045708 - 3046451 | 27385.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


