Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | DW921_12885 | Not Available | Negative | 3021087 - 3021323 | 8434.87 |
| glycoside hydrolase family 92 protein | DW921_12890 | Not Available | Positive | 3021852 - 3024122 | 85165.4 |
| glycoside hydrolase family 92 protein | DW921_12895 | Not Available | Positive | 3024119 - 3026401 | 86416.7 |
| acetylhydrolase | DW921_12900 | Not Available | Negative | 3026517 - 3028211 | 63792.3 |
| sialate o-acetylesterase | DW921_12905 | Not Available | Negative | 3028225 - 3030330 | 77949.0 |
| duf1624 domain-containing protein | DW921_12915 | Not Available | Negative | 3031845 - 3032924 | 40932.5 |
| hypothetical protein | DW921_12920 | Not Available | Positive | 3033002 - 3033325 | 12365.6 |
| is66 family insertion sequence hypothetical protein | DW921_12925 | Not Available | Positive | 3033318 - 3033686 | 14416.6 |
| is66 family transposase | DW921_12930 | Not Available | Positive | 3033774 - 3035399 | 62904.9 |
| duf5009 domain-containing protein | DW921_12935 | Not Available | Negative | 3035531 - 3036670 | 44034.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


