Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dicarboxylate/amino acid:cation symporter | DW921_12835 | Not Available | Negative | 3008091 - 3009257 | 41351.5 |
| hypothetical protein | DW921_12840 | Not Available | Negative | 3009269 - 3010315 | 39683.1 |
| hypothetical protein | DW921_12845 | Not Available | Negative | 3010416 - 3012956 | 95110.7 |
| hypothetical protein | DW921_12850 | Not Available | Positive | 3013082 - 3013333 | 9435.22 |
| duf3108 domain-containing protein | DW921_12855 | Not Available | Negative | 3013366 - 3014181 | 31318.0 |
| hypothetical protein | DW921_12860 | Not Available | Negative | 3014187 - 3016118 | 74078.6 |
| hypothetical protein | DW921_12865 | Not Available | Negative | 3016115 - 3017620 | 57217.4 |
| 6-phosphofructokinase | DW921_12870 | Not Available | Positive | 3017763 - 3018773 | 35876.5 |
| ribonuclease iii | DW921_12875 | Not Available | Negative | 3018875 - 3019801 | 35386.1 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DW921_12880 | Not Available | Negative | 3019805 - 3021070 | 44845.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


