Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iii | DW921_12670 | Not Available | Positive | 2971967 - 2973736 | 66527.0 |
| hypothetical protein | DW921_12675 | Not Available | Positive | 2974029 - 2974244 | 7833.5 |
| hypothetical protein | DW921_12680 | Not Available | Positive | 2974263 - 2974472 | 8000.52 |
| prtrc system protein e | DW921_12685 | Not Available | Positive | 2974491 - 2975552 | 39317.6 |
| prtrc system protein c | DW921_12690 | Not Available | Positive | 2975597 - 2975818 | 8359.08 |
| peptidase | DW921_12695 | Not Available | Positive | 2975855 - 2976964 | 44144.4 |
| prtrc system protein b | DW921_12700 | Not Available | Positive | 2976970 - 2977671 | 26744.3 |
| prtrc system thif family protein | DW921_12705 | Not Available | Positive | 2977668 - 2978450 | 29454.8 |
| dna-binding protein | DW921_12710 | Not Available | Negative | 2978509 - 2978814 | 11723.2 |
| hypothetical protein | DW921_12715 | Not Available | Negative | 2979233 - 2979994 | 29869.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


