Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 2950711 - 2950786 | Not Available |
| carboxynorspermidine decarboxylase | DW921_12575 | Not Available | Negative | 2950939 - 2952102 | 44412.1 |
| atp-dependent dna helicase | DW921_12580 | Not Available | Negative | 2952150 - 2954531 | 90669.7 |
| duf4923 family protein | DW921_12585 | Not Available | Negative | 2954544 - 2955263 | 26124.8 |
| carboxylating nicotinate-nucleotide diphosphorylase | DW921_12590 | Not Available | Negative | 2955260 - 2956114 | 31612.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DW921_12595 | Not Available | Positive | 2956213 - 2956686 | 18187.2 |
| lysm peptidoglycan-binding domain-containing protein | DW921_12600 | Not Available | Negative | 2956693 - 2957586 | 34662.7 |
| dna-binding response regulator | DW921_12605 | Not Available | Positive | 2957734 - 2958420 | 26383.9 |
| sensor histidine kinase | DW921_12610 | Not Available | Positive | 2958417 - 2959784 | 52018.6 |
| magnesium-translocating p-type atpase | DW921_12615 | Not Available | Positive | 2959914 - 2962556 | 97990.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


