Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW921_12465 | Not Available | Negative | 2938285 - 2939415 | 41899.6 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DW921_12470 | Not Available | Negative | 2939442 - 2940263 | 29356.7 |
| had family phosphatase | DW921_12475 | Not Available | Negative | 2940339 - 2940986 | 24684.6 |
| divalent metal cation transporter | DW921_12480 | Not Available | Negative | 2941003 - 2942265 | 45984.0 |
| hypothetical protein | DW921_12485 | Not Available | Negative | 2942338 - 2943570 | 45354.4 |
| hypothetical protein | DW921_12490 | Not Available | Negative | 2943578 - 2943985 | 15252.7 |
| rna polymerase sigma factor rpod/siga | DW921_12495 | Not Available | Negative | 2944133 - 2944993 | 32821.3 |
| pdz domain-containing protein | DW921_12500 | Not Available | Negative | 2945186 - 2946685 | 53258.9 |
| yihy/virulence factor brkb family protein | DW921_12510 | Not Available | Positive | 2947328 - 2948647 | 50527.1 |
| riboflavin synthase | DW921_12515 | Not Available | Negative | 2948785 - 2949390 | 22551.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


