Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | DW921_12415 | Not Available | Negative | 2922753 - 2924267 | 57962.6 |
| crotonobetainyl-coa--carnitine coa-transferase | DW921_12420 | Not Available | Positive | 2924650 - 2926122 | 55407.6 |
| arginase family protein | DW921_12425 | Not Available | Positive | 2926274 - 2927020 | 28573.7 |
| alpha/beta hydrolase | DW921_12430 | Not Available | Positive | 2927158 - 2928222 | 39489.1 |
| calcium:sodium exchange protein | DW921_12435 | Not Available | Negative | 2928326 - 2929339 | 38988.0 |
| hypothetical protein | DW921_12440 | Not Available | Positive | 2929657 - 2930880 | 46431.1 |
| hypothetical protein | DW921_12445 | Not Available | Positive | 2930950 - 2931393 | 16886.1 |
| duf5017 domain-containing protein | DW921_12450 | Not Available | Negative | 2931565 - 2933481 | 70770.9 |
| tonb-dependent receptor | DW921_12455 | Not Available | Negative | 2933502 - 2936081 | 95019.2 |
| energy-dependent translational throttle protein etta | DW921_12460 | Not Available | Negative | 2936514 - 2938202 | 63903.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


