Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter atp-binding protein | DW921_12365 | Not Available | Negative | 2912029 - 2912790 | 28167.3 |
| zinc abc transporter substrate-binding protein | DW921_12370 | Not Available | Negative | 2912787 - 2913677 | 33506.0 |
| hypothetical protein | DW921_12375 | Not Available | Negative | 2913841 - 2914587 | 27001.7 |
| hypothetical protein | DW921_12380 | Not Available | Negative | 2914697 - 2916664 | 70340.9 |
| hypothetical protein | DW921_12385 | Not Available | Positive | 2916952 - 2917158 | 8394.2 |
| sam-dependent methyltransferase | DW921_12390 | Not Available | Negative | 2917155 - 2917832 | 25747.8 |
| deda family protein | DW921_12395 | Not Available | Negative | 2917845 - 2918300 | 16753.8 |
| hypothetical protein | DW921_12400 | Not Available | Negative | 2918276 - 2919211 | 34785.9 |
| phosphoribosylamine--glycine ligase | DW921_12405 | Not Available | Negative | 2919222 - 2920496 | 45641.9 |
| s9 family peptidase | DW921_12410 | Not Available | Negative | 2920539 - 2922734 | 83359.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


