Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW921_12315 | Not Available | Positive | 2899856 - 2901265 | 51993.4 |
| 6-bladed beta-propeller | DW921_12320 | Not Available | Negative | 2901262 - 2902395 | 42612.4 |
| hypothetical protein | DW921_12325 | Not Available | Negative | 2902537 - 2903007 | 17837.0 |
| acyltransferase | DW921_12330 | Not Available | Negative | 2903182 - 2904345 | 43530.3 |
| acyltransferase | DW921_12335 | Not Available | Negative | 2904401 - 2905465 | 41464.4 |
| hypothetical protein | DW921_12340 | Not Available | Negative | 2905543 - 2905746 | 7259.65 |
| acyltransferase | DW921_12345 | Not Available | Negative | 2906073 - 2907212 | 43931.9 |
| crp/fnr family transcriptional regulator | DW921_12350 | Not Available | Negative | 2907284 - 2907865 | 22179.8 |
| polysaccharide deacetylase family protein | DW921_12355 | Not Available | Negative | 2907937 - 2908548 | 24477.8 |
| duf2723 domain-containing protein | DW921_12360 | Not Available | Negative | 2908614 - 2911940 | 126809.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


