Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_12260 | Not Available | Positive | 2890040 - 2890588 | 20860.8 |
| hypothetical protein | DW921_12265 | Not Available | Negative | 2890846 - 2891208 | 14227.5 |
| nuclear transport factor 2 family protein | DW921_12270 | Not Available | Positive | 2891301 - 2891663 | 13684.3 |
| gnat family n-acetyltransferase | DW921_12275 | Not Available | Positive | 2891675 - 2892532 | 32305.7 |
| tetracycline resistance ribosomal protection protein | DW921_12280 | Not Available | Positive | 2892789 - 2894714 | 72084.5 |
| hypothetical protein | DW921_12285 | Not Available | Positive | 2894714 - 2894893 | 6947.29 |
| l-aspartate oxidase | DW921_12295 | Not Available | Negative | 2895959 - 2897542 | 59084.8 |
| hypothetical protein | DW921_12300 | Not Available | Positive | 2897619 - 2898035 | 15882.9 |
| hypothetical protein | DW921_12305 | Not Available | Positive | 2898066 - 2898461 | 15648.4 |
| dihydrolipoyl dehydrogenase | DW921_12310 | Not Available | Positive | 2898499 - 2899842 | 48448.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


