Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family transcriptional regulator | DW921_12205 | Not Available | Positive | 2881182 - 2881772 | 22232.2 |
| hypothetical protein | DW921_12210 | Not Available | Positive | 2881754 - 2882188 | 16300.8 |
| duf4134 domain-containing protein | DW921_12215 | Not Available | Positive | 2882257 - 2882613 | 12560.6 |
| duf4133 domain-containing protein | DW921_12220 | Not Available | Positive | 2882626 - 2882916 | 10627.6 |
| dna-binding protein | DW921_12230 | Not Available | Positive | 2884513 - 2885238 | 27474.1 |
| site-specific integrase | DW921_12235 | Not Available | Positive | 2885578 - 2886717 | 43392.5 |
| dna-binding protein | DW921_12240 | Not Available | Positive | 2886743 - 2887192 | 17150.2 |
| hypothetical protein | DW921_12245 | Not Available | Positive | 2887290 - 2888132 | 30722.5 |
| hypothetical protein | DW921_12250 | Not Available | Positive | 2888363 - 2888758 | 15309.5 |
| relaxase | DW921_12255 | Not Available | Positive | 2888755 - 2890020 | 47096.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


