Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system higb family toxin | DW921_12105 | Not Available | Positive | 2862266 - 2862562 | 11483.8 |
| helix-turn-helix domain-containing protein | DW921_12110 | Not Available | Positive | 2862600 - 2862965 | 13515.4 |
| Trna-pro | Not Available | Not Available | Positive | 2863079 - 2863156 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2863195 - 2863269 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2863308 - 2863382 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2863421 - 2863495 | Not Available |
| had family phosphatase | DW921_12135 | Not Available | Negative | 2863651 - 2864286 | 24170.8 |
| rlua family pseudouridine synthase | DW921_12140 | Not Available | Negative | 2864297 - 2865220 | 35663.1 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DW921_12145 | Not Available | Negative | 2865247 - 2866680 | 54746.9 |
| pyruvate, phosphate dikinase | DW921_12150 | Not Available | Positive | 2866903 - 2869626 | 99864.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


