Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW921_12045 | Not Available | Positive | 2848661 - 2850970 | 86297.9 |
| phospho-sugar mutase | DW921_12050 | Not Available | Positive | 2851161 - 2852906 | 64483.8 |
| class a beta-lactamase, subclass a2 | DW921_12055 | Not Available | Negative | 2853064 - 2853957 | 33418.0 |
| is66 family transposase | DW921_12060 | Not Available | Positive | 2854047 - 2854833 | 30351.6 |
| is66 family transposase | DW921_12065 | Not Available | Positive | 2855025 - 2855687 | 25773.9 |
| hypothetical protein | DW921_12070 | Not Available | Positive | 2855777 - 2856001 | 8523.5 |
| 6-bladed beta-propeller | DW921_12075 | Not Available | Positive | 2856176 - 2857303 | 44236.4 |
| hypothetical protein | DW921_12080 | Not Available | Positive | 2857288 - 2857545 | 9671.12 |
| hypothetical protein | DW921_12090 | Not Available | Positive | 2858091 - 2859179 | 42600.0 |
| cupin domain-containing protein | DW921_12100 | Not Available | Negative | 2860928 - 2861755 | 30369.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


