Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_11890 | Not Available | Positive | 2813720 - 2814295 | 22205.4 |
| isochorismatase family protein | DW921_11895 | Not Available | Positive | 2814311 - 2814865 | 20652.0 |
| nicotinate phosphoribosyltransferase | DW921_11900 | Not Available | Positive | 2814862 - 2816064 | 46172.1 |
| fic family protein | DW921_11905 | Not Available | Positive | 2816067 - 2816900 | 32034.4 |
| dna-binding protein | DW921_11910 | Not Available | Positive | 2817392 - 2817688 | 11387.7 |
| dna-binding protein | DW921_11915 | Not Available | Positive | 2817685 - 2817987 | 11555.8 |
| transporter | DW921_11920 | Not Available | Negative | 2818061 - 2818438 | 14465.7 |
| site-specific integrase | DW921_11925 | Not Available | Negative | 2818453 - 2819703 | 48108.1 |
| mate family efflux transporter | DW921_11935 | Not Available | Negative | 2821646 - 2822989 | 48301.4 |
| glycoside hydrolase family 92 protein | DW921_11940 | Not Available | Negative | 2823344 - 2825674 | 88335.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


