Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_11635 | Not Available | Positive | 2754882 - 2755901 | 40601.0 |
| duf3853 family protein | DW921_11640 | Not Available | Positive | 2756125 - 2756433 | 11129.7 |
| mobilization protein | DW921_11645 | Not Available | Positive | 2756448 - 2757524 | 41084.6 |
| dna primase | DW921_11650 | Not Available | Positive | 2757741 - 2758700 | 36958.1 |
| mobilization protein | DW921_11655 | Not Available | Positive | 2758912 - 2760315 | 54761.7 |
| steroid delta-isomerase | DW921_11660 | Not Available | Positive | 2760404 - 2760757 | 13706.5 |
| lincosamide nucleotidyltransferase lnu(an2) | DW921_11665 | Not Available | Negative | 2761204 - 2761716 | 19690.2 |
| tonb-dependent receptor | DW921_11675 | Not Available | Positive | 2762408 - 2765446 | 112664.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_11680 | Not Available | Positive | 2765460 - 2767238 | 66376.7 |
| arac family transcriptional regulator | DW921_11685 | Not Available | Negative | 2767530 - 2768408 | 33443.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


