Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DW921_11585 | Not Available | Positive | 2743482 - 2743967 | 17943.7 |
| sam-dependent methyltransferase | DW921_11590 | Not Available | Positive | 2743969 - 2745204 | 45899.2 |
| gfo/idh/moca family oxidoreductase | DW921_11595 | Not Available | Positive | 2745281 - 2746417 | 42460.2 |
| sufe family protein | DW921_11600 | Not Available | Negative | 2746550 - 2746978 | 16148.4 |
| glutamine cyclotransferase | DW921_11605 | Not Available | Negative | 2746987 - 2747997 | 37547.7 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DW921_11610 | Not Available | Negative | 2748062 - 2749828 | 65490.1 |
| phosphate butyryltransferase | DW921_11615 | Not Available | Positive | 2749910 - 2750842 | 33791.2 |
| butyrate kinase | DW921_11620 | Not Available | Positive | 2750839 - 2751927 | 39727.7 |
| site-specific integrase | DW921_11625 | Not Available | Positive | 2752229 - 2753512 | 50553.4 |
| duf1016 family protein | DW921_11630 | Not Available | Positive | 2753579 - 2754871 | 49179.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


