Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DW921_11535 | Not Available | Positive | 2729069 - 2729278 | 7944.74 |
| dna (cytosine-5-)-methyltransferase | DW921_11540 | Not Available | Positive | 2729287 - 2730516 | 47293.5 |
| hypothetical protein | DW921_11545 | Not Available | Positive | 2730518 - 2731240 | 27809.1 |
| gtpase | DW921_11550 | Not Available | Positive | 2731237 - 2733108 | 72219.2 |
| llaji family restriction endonuclease | DW921_11555 | Not Available | Positive | 2733105 - 2735276 | 83632.9 |
| aaa family atpase | DW921_11560 | Not Available | Positive | 2735273 - 2736766 | 57177.0 |
| hypothetical protein | DW921_11565 | Not Available | Positive | 2736973 - 2737512 | 20103.9 |
| helicase | DW921_11570 | Not Available | Positive | 2737509 - 2739806 | 88464.2 |
| dna mismatch endonuclease vsr | DW921_11575 | Not Available | Positive | 2739834 - 2740337 | 20512.1 |
| histidinol-phosphatase | DW921_11580 | Not Available | Positive | 2740371 - 2743019 | 99959.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


