Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3316 domain-containing protein | DW921_11435 | Not Available | Positive | 2710690 - 2711535 | 32028.1 |
| peptidase s41 | DW921_11440 | Not Available | Positive | 2711538 - 2712563 | 38394.1 |
| Trna-leu | Not Available | Not Available | Positive | 2712629 - 2712712 | Not Available |
| hypothetical protein | DW921_11450 | Not Available | Negative | 2712932 - 2713159 | 8681.33 |
| Trna-leu | Not Available | Not Available | Positive | 2713805 - 2713888 | Not Available |
| 4fe-4s dicluster domain-containing protein | DW921_11460 | Not Available | Negative | 2713948 - 2715150 | 43133.9 |
| electron transfer flavoprotein subunit beta/fixa family protein | DW921_11465 | Not Available | Negative | 2715156 - 2715935 | 28232.0 |
| fad-binding oxidoreductase | DW921_11470 | Not Available | Negative | 2715999 - 2717225 | 44367.3 |
| hypothetical protein | DW921_11475 | Not Available | Negative | 2717228 - 2718538 | 49322.9 |
| hypothetical protein | DW921_11480 | Not Available | Positive | 2718744 - 2719637 | 34108.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


