Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DW921_11385 | Not Available | Negative | 2695028 - 2696212 | 42593.1 |
| hypothetical protein | DW921_11390 | Not Available | Negative | 2696348 - 2696767 | 15620.5 |
| dna-binding response regulator | DW921_11395 | Not Available | Negative | 2696860 - 2697621 | 28881.0 |
| histidine kinase | DW921_11400 | Not Available | Negative | 2697618 - 2698658 | 40196.3 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_11405 | Not Available | Negative | 2698668 - 2699567 | 33065.4 |
| cusa/czca family heavy metal efflux rnd transporter | DW921_11410 | Not Available | Negative | 2699578 - 2703912 | 161563.0 |
| peptidylprolyl isomerase | DW921_11415 | Not Available | Negative | 2704151 - 2704780 | 23298.4 |
| glycine--trna ligase | DW921_11420 | Not Available | Negative | 2704799 - 2706343 | 59584.4 |
| mate family efflux transporter | DW921_11425 | Not Available | Positive | 2706648 - 2707976 | 48261.3 |
| dna gyrase/topoisomerase iv subunit a | DW921_11430 | Not Available | Positive | 2708052 - 2710685 | 101258.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


