Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW921_11335 | Not Available | Positive | 2675324 - 2675908 | 21739.5 |
| tonb-dependent receptor | DW921_11340 | Not Available | Positive | 2676118 - 2678592 | 93029.9 |
| glycoside hydrolase family 2 protein | DW921_11345 | Not Available | Positive | 2678753 - 2681437 | 102083.0 |
| tetratricopeptide repeat protein | DW921_11350 | Not Available | Positive | 2681579 - 2682862 | 50096.0 |
| duf2723 domain-containing protein | DW921_11355 | Not Available | Positive | 2683027 - 2686449 | 129798.0 |
| hypothetical protein | DW921_11360 | Not Available | Negative | 2686439 - 2687395 | 35977.0 |
| u32 family peptidase | DW921_11365 | Not Available | Negative | 2687407 - 2689236 | 69188.1 |
| homoserine o-succinyltransferase | DW921_11370 | Not Available | Negative | 2689233 - 2690159 | 36229.2 |
| tolc family protein | DW921_11375 | Not Available | Negative | 2690700 - 2691884 | 44663.4 |
| acrb/acrd/acrf family protein | DW921_11380 | Not Available | Negative | 2691921 - 2695016 | 112570.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


