Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_11285 | Not Available | Positive | 2661123 - 2661695 | 22624.1 |
| hypothetical protein | DW921_11290 | Not Available | Positive | 2661940 - 2662407 | 18215.3 |
| peptide chain release factor 3 | DW921_11295 | Not Available | Negative | 2662489 - 2664057 | 59767.4 |
| dtdp-4-dehydrorhamnose reductase | DW921_11300 | Not Available | Negative | 2664083 - 2664949 | 31961.1 |
| duf4924 family protein | DW921_11305 | Not Available | Negative | 2664962 - 2665507 | 21194.8 |
| lyse family translocator | DW921_11310 | Not Available | Negative | 2665510 - 2666169 | 24200.5 |
| phosphoribosylformylglycinamidine synthase | DW921_11315 | Not Available | Positive | 2666305 - 2670012 | 137377.0 |
| hybrid sensor histidine kinase/response regulator | DW921_11320 | Not Available | Positive | 2670184 - 2674176 | 152891.0 |
| chromate transporter | DW921_11325 | Not Available | Positive | 2674183 - 2674752 | 21138.6 |
| chromate transporter | DW921_11330 | Not Available | Positive | 2674749 - 2675312 | 20330.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


