Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper homeostasis protein cutc | DW921_11235 | Not Available | Negative | 2649475 - 2650221 | 26909.6 |
| Trna-arg | Not Available | Not Available | Positive | 2650313 - 2650387 | Not Available |
| aspartate--ammonia ligase | DW921_11245 | Not Available | Positive | 2650611 - 2651651 | 39863.3 |
| uracil-dna glycosylase | DW921_11250 | Not Available | Positive | 2651672 - 2652334 | 25049.9 |
| lps-assembly protein lptd | DW921_11255 | Not Available | Negative | 2652419 - 2655160 | 104575.0 |
| hdig domain-containing protein | DW921_11260 | Not Available | Negative | 2655250 - 2655786 | 20254.4 |
| duf1343 domain-containing protein | DW921_11265 | Not Available | Positive | 2655840 - 2657105 | 47623.5 |
| signal recognition particle protein | DW921_11270 | Not Available | Negative | 2657178 - 2658509 | 49492.5 |
| dmt family transporter | DW921_11275 | Not Available | Negative | 2658638 - 2659588 | 34152.7 |
| mate family efflux transporter | DW921_11280 | Not Available | Negative | 2659613 - 2660935 | 48714.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


