Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_11130 | Not Available | Positive | 2608764 - 2609354 | 22363.7 |
| lysine--trna ligase | DW921_11140 | Not Available | Positive | 2610139 - 2611866 | 66332.1 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DW921_11145 | Not Available | Positive | 2611947 - 2612942 | 37299.4 |
| glucose-6-phosphate isomerase | DW921_11150 | Not Available | Positive | 2612980 - 2614329 | 49856.0 |
| had family hydrolase | DW921_11155 | Not Available | Positive | 2614458 - 2615183 | 26948.3 |
| duf4091 domain-containing protein | DW921_11160 | Not Available | Negative | 2615302 - 2617002 | 65503.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_11165 | Not Available | Negative | 2617170 - 2619239 | 78407.6 |
| tonb-dependent receptor | DW921_11170 | Not Available | Negative | 2619251 - 2622445 | 118098.0 |
| tonb-dependent receptor | DW921_11175 | Not Available | Positive | 2623055 - 2626249 | 117698.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_11180 | Not Available | Positive | 2626262 - 2628286 | 77303.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


