Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine nucleotide alpha hydrolase family protein | DW921_11080 | Not Available | Negative | 2598978 - 2599736 | 29069.6 |
| hypothetical protein | DW921_11085 | Not Available | Positive | 2599990 - 2601405 | 53931.5 |
| nodulation efficiency protein d (nfed) | DW921_11090 | Not Available | Positive | 2601433 - 2601897 | 16404.3 |
| upf0365 family protein | DW921_11095 | Not Available | Positive | 2601938 - 2602939 | 35752.4 |
| phosphorylase | DW921_11100 | Not Available | Positive | 2602993 - 2603871 | 32249.7 |
| gaf domain-containing protein | DW921_11105 | Not Available | Positive | 2603944 - 2604435 | 18156.6 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DW921_11110 | Not Available | Positive | 2604508 - 2605965 | 52921.3 |
| helix-turn-helix domain-containing protein | DW921_11115 | Not Available | Positive | 2606217 - 2607122 | 35262.8 |
| site-specific integrase | DW921_11120 | Not Available | Positive | 2607222 - 2608328 | 42746.1 |
| glutaredoxin-related protein | DW921_11125 | Not Available | Positive | 2608462 - 2608761 | 10854.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


