Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_11030 | Not Available | Positive | 2585192 - 2586628 | 55048.2 |
| abc transporter atp-binding protein | DW921_11035 | Not Available | Positive | 2586660 - 2587373 | 26921.2 |
| nlpc/p60 family protein | DW921_11040 | Not Available | Positive | 2587676 - 2588173 | 19055.2 |
| duf4858 domain-containing protein | DW921_11045 | Not Available | Positive | 2588202 - 2589203 | 38915.1 |
| hypothetical protein | DW921_11050 | Not Available | Negative | 2589327 - 2589701 | 14382.0 |
| hypothetical protein | DW921_11055 | Not Available | Negative | 2590487 - 2594761 | 167782.0 |
| thiamine diphosphokinase | DW921_11060 | Not Available | Negative | 2595263 - 2595913 | 24190.6 |
| nicotinamide riboside transporter pnuc | DW921_11065 | Not Available | Negative | 2595926 - 2596522 | 23702.2 |
| hydroxylamine reductase | DW921_11070 | Not Available | Negative | 2596584 - 2598236 | 60590.0 |
| crp/fnr family transcriptional regulator | DW921_11075 | Not Available | Positive | 2598351 - 2598974 | 23349.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


