Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional fucokinase/l-fucose-1-p-guanylyltransferase | DW921_10980 | Not Available | Positive | 2569363 - 2572200 | 105282.0 |
| ompa family protein | DW921_10985 | Not Available | Positive | 2572467 - 2573579 | 41426.4 |
| class i sam-dependent rrna methyltransferase | DW921_10990 | Not Available | Negative | 2573818 - 2575005 | 44573.2 |
| 3'-5' exonuclease domain-containing protein 2 | DW921_10995 | Not Available | Negative | 2575031 - 2575645 | 23604.5 |
| duf5063 domain-containing protein | DW921_11000 | Not Available | Negative | 2575671 - 2576279 | 23456.5 |
| dna translocase ftsk | DW921_11005 | Not Available | Positive | 2576380 - 2578932 | 94223.6 |
| hypothetical protein | DW921_11010 | Not Available | Positive | 2578945 - 2579568 | 23916.4 |
| duf4836 family protein | DW921_11015 | Not Available | Positive | 2579652 - 2581193 | 55896.8 |
| thioredoxin-disulfide reductase | DW921_11020 | Not Available | Positive | 2581223 - 2582170 | 33874.5 |
| insulinase family protein | DW921_11025 | Not Available | Positive | 2582304 - 2585123 | 106280.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


