Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DW921_10930 | Not Available | Positive | 2560042 - 2560761 | 27808.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DW921_10935 | Not Available | Positive | 2560806 - 2562215 | 54377.8 |
| arac family transcriptional regulator | DW921_10940 | Not Available | Positive | 2562222 - 2562710 | 19265.3 |
| hypothetical protein | DW921_10945 | Not Available | Positive | 2562707 - 2563147 | 16979.5 |
| hypothetical protein | DW921_10950 | Not Available | Positive | 2563318 - 2564817 | 55833.9 |
| hypothetical protein | DW921_10955 | Not Available | Positive | 2564842 - 2565324 | 18150.7 |
| sugar mfs transporter | DW921_10960 | Not Available | Positive | 2565340 - 2566572 | 44648.3 |
| gdp-mannose 4,6-dehydratase | DW921_10965 | Not Available | Positive | 2566601 - 2567680 | 41263.5 |
| gdp-l-fucose synthase | DW921_10970 | Not Available | Positive | 2567690 - 2568790 | 41586.1 |
| upxy family transcription antiterminator | DW921_10975 | Not Available | Positive | 2568805 - 2569332 | 20171.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


