Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | DW921_10770 | Not Available | Negative | 2527708 - 2528199 | 18402.0 |
| Trna-ala | Not Available | Not Available | Positive | 2528302 - 2528378 | Not Available |
| nudix hydrolase | DW921_10780 | Not Available | Negative | 2528440 - 2528994 | 21420.3 |
| hypothetical protein | DW921_10785 | Not Available | Negative | 2529006 - 2530505 | 58107.5 |
| excinuclease abc subunit uvra | DW921_10790 | Not Available | Positive | 2530598 - 2533372 | 104047.0 |
| ahpc/tsa family protein | DW921_10795 | Not Available | Negative | 2533494 - 2534501 | 37686.0 |
| phosphotransferase | DW921_10800 | Not Available | Positive | 2534593 - 2536014 | 55007.2 |
| nucleotidyltransferase family protein | DW921_10805 | Not Available | Positive | 2536029 - 2536766 | 27998.8 |
| hypothetical protein | DW921_10810 | Not Available | Negative | 2536786 - 2538096 | 51147.4 |
| methionine synthase | DW921_10815 | Not Available | Negative | 2538344 - 2541091 | 100599.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


