Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | DW921_10720 | Not Available | Positive | 2517363 - 2519381 | 73111.9 |
| ribose 5-phosphate isomerase b | DW921_10725 | Not Available | Positive | 2519381 - 2519815 | 15998.0 |
| duf4468 domain-containing protein | DW921_10730 | Not Available | Positive | 2519908 - 2520954 | 39027.5 |
| porin family protein | DW921_10735 | Not Available | Negative | 2521465 - 2522100 | 23512.9 |
| duf4136 domain-containing protein | DW921_10740 | Not Available | Negative | 2522115 - 2522750 | 24110.2 |
| duf4251 domain-containing protein | DW921_10745 | Not Available | Negative | 2522817 - 2523365 | 19725.8 |
| hypothetical protein | DW921_10750 | Not Available | Positive | 2523518 - 2524177 | 25357.5 |
| diacylglucosamine hydrolase | DW921_10755 | Not Available | Negative | 2524149 - 2524739 | 22765.2 |
| marr family transcriptional regulator | DW921_10760 | Not Available | Negative | 2524757 - 2525125 | 13496.7 |
| pyridine nucleotide-disulfide oxidoreductase | DW921_10765 | Not Available | Negative | 2525130 - 2527583 | 89278.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


