Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DW921_10670 | Not Available | Positive | 2501430 - 2502425 | 37366.5 |
| hypothetical protein | DW921_10675 | Not Available | Positive | 2502573 - 2503106 | 20504.2 |
| hypothetical protein | DW921_10680 | Not Available | Positive | 2503046 - 2503762 | 28067.7 |
| hypothetical protein | DW921_10685 | Not Available | Negative | 2504045 - 2504383 | 12525.0 |
| hypothetical protein | DW921_10690 | Not Available | Negative | 2504371 - 2506053 | 62433.5 |
| glutamine synthetase type iii | DW921_10695 | Not Available | Negative | 2506294 - 2508483 | 82305.7 |
| ll-diaminopimelate aminotransferase | DW921_10700 | Not Available | Negative | 2508552 - 2509808 | 46651.4 |
| diaminopimelate epimerase | DW921_10705 | Not Available | Negative | 2509820 - 2510635 | 29418.1 |
| asparagine synthase b | DW921_10710 | Not Available | Negative | 2510652 - 2512322 | 63026.6 |
| glutamate synthase large subunit | DW921_10715 | Not Available | Negative | 2512369 - 2516931 | 166997.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


